Noah Gray

19 posts · 5,902 views

'Nature' editor handling a variety of neuroscience. I also like to do the blog thing and the Twitter (@noahwilliamgray). And slip & slide.

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  • March 18, 2009
  • 06:34 PM
  • 475 views

Biochemists rejoice as they receive optogenetic control of signaling pathways

by Noah Gray in Nothing's Shocking

The Deisseroth lab (Stanford) has created chimeric molecules combining parts from rhodopsin and adrenergic receptors. The result? Light-activated signaling molecules, giving biochemists control over signaling.... Read more »

Airan, R., Thompson, K., Fenno, L., Bernstein, H., & Deisseroth, K. (2009) Temporally precise in vivo control of intracellular signalling. Nature. DOI: 10.1038/nature07926  

  • August 22, 2007
  • 05:08 PM
  • 471 views

What kept Einstein smart…

by Noah Gray in Action Potential

Assessing whether Baby Einstein videos can actually harm linguistic development in infants.... Read more »

  • August 27, 2008
  • 04:01 AM
  • 411 views

What does mirror self-recognition really mean?

by Noah Gray in Nothing's Shocking

Examination of the latest corvid research describing mirror self-recognition for these birds.... Read more »

  • July 30, 2007
  • 05:43 PM
  • 408 views

Another way for the sirtuins to enhance longevity

by Noah Gray in Action Potential

Controlling the activity of SIRT2 can be protective against Parkinsonian pathology involving α-synuclein... ... Read more »

Outeiro, T., Kontopoulos, E., Altmann, S., Kufareva, I., Strathearn, K., Amore, A., Volk, C., Maxwell, M., Rochet, J., McLean, P.... (2007) Sirtuin 2 Inhibitors Rescue  -Synuclein-Mediated Toxicity in Models of Parkinson's Disease. Science, 317(5837), 516-519. DOI: 10.1126/science.1143780  

  • February 22, 2009
  • 03:46 AM
  • 365 views

Research highlights from Dr. Obvious: Tracking the citation advantage of open-access publication in the developing world

by Noah Gray in Nothing's Shocking

Interview with Dr. Obvious regarding his latest work tracking the citation advantage of Open-Access publications in the developing world.... Read more »

  • August 7, 2007
  • 02:38 PM
  • 354 views

Politicking for a mate

by Noah Gray in Action Potential

Exploring the intricate politics involved in chimp hierarchies...... Read more »

  • October 24, 2007
  • 02:54 PM
  • 333 views

Patience, fairness and getting the girl

by Noah Gray in Action Potential

Testing chimps in a head-to-head test of patience with humans.... Read more »

  • November 13, 2008
  • 10:56 PM
  • 309 views

The laboratory isn't a safe place for experiments anymore

by Noah Gray in Nothing's Shocking

Detailing the recent finding that experiment-modulating chemicals can leach out of the labware...... Read more »

McDonald, G., Hudson, A., Dunn, S., You, H., Baker, G., Whittal, R., Martin, J., Jha, A., Edmondson, D., & Holt, A. (2008) Bioactive Contaminants Leach from Disposable Laboratory Plasticware. Science, 322(5903), 917-917. DOI: 10.1126/science.1162395  

  • November 20, 2007
  • 06:11 PM
  • 308 views

Genetic control of intelligence

by Noah Gray in Action Potential

Study proposes that in order to achieve the benefits of nursing on intelligence, a particular allele of the metabolizing enzyme FADS2 is required.... Read more »

Caspi, A., Williams, B., Kim-Cohen, J., Craig, I., Milne, B., Poulton, R., Schalkwyk, L., Taylor, A., Werts, H., & Moffitt, T. (2007) Moderation of breastfeeding effects on the IQ by genetic variation in fatty acid metabolism. Proceedings of the National Academy of Sciences, 104(47), 18860-18865. DOI: 10.1073/pnas.0704292104  

  • November 28, 2007
  • 02:11 PM
  • 307 views

Cells reverting back to their youth

by Noah Gray in Action Potential

3 significant papers involving stem cell engineering came out at the same time and demanded attention.... Read more »

Takahashi, K., Tanabe, K., Ohnuki, M., Narita, M., Ichisaka, T., Tomoda, K., & Yamanaka, S. (2007) Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors. Cell, 131(5), 861-872. DOI: 10.1016/j.cell.2007.11.019  

Yu, J., Vodyanik, M., Smuga-Otto, K., Antosiewicz-Bourget, J., Frane, J., Tian, S., Nie, J., Jonsdottir, G., Ruotti, V., Stewart, R.... (2007) Induced Pluripotent Stem Cell Lines Derived from Human Somatic Cells. Science, 318(5858), 1917-1920. DOI: 10.1126/science.1151526  

Byrne, J., Pedersen, D., Clepper, L., Nelson, M., Sanger, W., Gokhale, S., Wolf, D., & Mitalipov, S. (2007) Producing primate embryonic stem cells by somatic cell nuclear transfer. Nature, 450(7169), 497-502. DOI: 10.1038/nature06357  

  • March 27, 2009
  • 02:59 AM
  • 304 views

Research highlights from Dr. Obvious: Depressed kids have experienced more depressing events

by Noah Gray in Nothing's Shocking

Interview with Dr. Obvious to discuss the ground-breaking finding that kids who experience more depressing events are more depressed.... Read more »

Mayer, L., Lopez-Duran, N., Kovacs, M., George, C., Baji, I., Kapornai, K., Kiss, E., & Vetró, �. (2009) Stressful life events in a clinical sample of depressed children in Hungary. Journal of Affective Disorders, 115(1-2), 207-214. DOI: 10.1016/j.jad.2008.08.018  

  • October 30, 2008
  • 05:40 PM
  • 300 views

Using the Google PageRank algorithm as an alternative citation metric

by Noah Gray in Nothing's Shocking

The Journal of Neuroscience ran a series of pieces examining alternative metrics. Here, the Google pagerank is assessed.... Read more »

  • December 18, 2007
  • 04:44 PM
  • 296 views

Learning from your horrible mistakes

by Noah Gray in Action Potential

Those with a particular genetic isoform of the D2 dopamine receptor will not learn as well from their mistakes.... Read more »

Klein, T., Neumann, J., Reuter, M., Hennig, J., von Cramon, D., & Ullsperger, M. (2007) Genetically Determined Differences in Learning from Errors. Science, 318(5856), 1642-1645. DOI: 10.1126/science.1145044  

  • January 14, 2008
  • 05:26 PM
  • 289 views

Monkeys master mental math

by Noah Gray in Action Potential

Researchers explore how well a non-human primate can do math in its head.... Read more »

  • December 4, 2007
  • 04:02 PM
  • 284 views

Antidepressants and caloric restriction, what's the connection?

by Noah Gray in Action Potential

Author found that an anti-depressant was able to extend lifespan.... Read more »

  • October 1, 2008
  • 10:13 PM
  • 282 views

Neuro Tech Update: Imaging calcium just got a lot easier

by Noah Gray in Nothing's Shocking

Perusing the latest technological adventures in functional Ca2 imaging in vivo.... Read more »

Wallace, D., zum Alten Borgloh, S., Astori, S., Yang, Y., Bausen, M., Kügler, S., Palmer, A., Tsien, R., Sprengel, R., Kerr, J.... (2008) Single-spike detection in vitro and in vivo with a genetic Ca2 sensor. Nature Methods, 5(9), 797-804. DOI: 10.1038/nmeth.1242  

Mank, M., Santos, A., Direnberger, S., Mrsic-Flogel, T., Hofer, S., Stein, V., Hendel, T., Reiff, D., Levelt, C., Borst, A.... (2008) A genetically encoded calcium indicator for chronic in vivo two-photon imaging. Nature Methods, 5(9), 805-811. DOI: 10.1038/nmeth.1243  

  • November 21, 2007
  • 06:37 PM
  • 280 views

Infants inherently interpret intentions?

by Noah Gray in Action Potential

Analyzing the social evaluation skills of pre-verbal infants.... Read more »

Hamlin, J., Wynn, K., & Bloom, P. (2007) Social evaluation by preverbal infants. Nature, 450(7169), 557-559. DOI: 10.1038/nature06288  

  • May 2, 2010
  • 07:01 PM
  • 73 views

Boozing Treeshrews: Heavyweight drinkers in small packages (from Anne-Marie Hodge's blog)

by Noah Gray in Nothing's Shocking


Although political and moral stances on alcohol use have gone back and forth over the decades, anthropological studies suggest that low-level alcohol ingestion has been an important factor in primate evolution. Alcohol is associated with ripe, nutrient-rich fruits, in addition to functioning as an appetite stimulant to quickly take advantage of ephemeral food resources (Dudley 2002). As highly mobile herbivores, primates could have benefited these alcohol-producing plants through pollination and wide seed dispersal capabilities, leading to important mutualisms and possible co-evolution between angiosperms and mammals. This type of relationship is not limited to primates. Mammals such as bats (Sanchez et al. 2004), rodents (Milton 2004), and even elephants (Morris et al. 2006) have all been shown to indulge (or overindulge) in fermented fruit whenever it is available (classic video of drunken African wildlife here). Mutual trade-offs could have led to the reciprocal adaptations necessary for co-evolution, in which plants incorporated more and more alcohol into their nectar and/or fruit, while mammals became increasingly able to tolerate and metabolize the alcohol, an adaptation allowing them to exploit fruiting plants and function as important pollinators and dispersers. Wiens et al. (2008) investigated the relationship between the Bertram palm (Eugeissona tristis) and its vertebrate pollinators, with a special focus on the pentailed treeshrew ( Ptilocercus lowii ) in Malaysia. The authors were interested in elucidating the role that alcohol exposure has had in mammalian evolution, in addition to determining whether fruits and/or flowers with high alcohol content benefit a plant by attracting mammalian pollinators. First, the authors investigated the phenology of the Bertram palm. They counted flowers and recorded features of the inflorescences, determining that the plants typically produce about half male and half hermaphroditic flowers, which bloom in synchrony and follow a unique succession cycle, with a very long nectar production phase followed by one or two days of pollen exposure, then a long period without nectar, with the cycle repeating all year round. To assess the effects of the mammals on the plant, the authors conducted a bagged inflorescence experiment which excluded vertebrates but allowed insects to access the palm flowers. The plants that were isolated from mammals had a 50% lower fruit set than controls, suggesting that these animals are significant pollinators of the Bertram palm. In addition, inflorescences were monitored during the night with cameras, and at least 80% of inflorescences were visited by at least one mammal each night. Analysis of feeding patterns showed that pentailed treeshrews and slow lorises spent more time feeding from the Bertram palms than from any other food source. Having gathered data on the basic ecology of the palm and the mammals of interest, Wiens et al. were primarily interested in the role of alcohol in this mutualism. They found that the flower buds contained complex yeast communities, with many species previously unknown to science. The authors tested alcohol concentrations in the nectar, and found that nectar inside the bud contained up to 3.8% alcohol (roughly equivalent to beer), while levels of alcohol freshly exuded nectar were lower, and “older” exuded nectar even lower. In order to determine how much alcohol was being consumed by the palm’s mammalian visitors, they used ethyl glucuronide (EtG) in hair samples as a biomarker. They tested several species, and found that the pentailed treeshrews had the highest EtG concentrations by a significant margin. If adjusted for body size, the alcohol levels indicated by EtG analysis of pentailed shrew hair would be enough to result in inebriation in humans. While the methods in this study were thorough and covered many aspects of the mutualism in question, the authors acknowledge two basic assumptions. The first assumption is that the animals are not showing a behavioral preference for buds with higher or lower alcohol content. The authors did not determine whether buds with higher than average alcohol levels in their nectar are more or less successful at attracting pollinators. Second, it is assumed that nectar which is removed by an animal is replaced with nectar with equivalent alcohol concentrations. This assumption could potentially prove problematic in the face of the phenological data which the authors report: freshly exuded nectar has higher alcohol concentrations than nectar which has been outside the bud for more than half an hour. The amount of time it takes a flower to replenish its nectar once it has been fed upon, which would be useful information, is not reported. However, treeshrews were shown to forage on the palm for an average of 136 minutes, which is longer than it takes for the nectar to “age.” This means that if they prefer lower alcohol levels, their feeding bouts are long enough to wait for nectar to “age” after being replenished by a flower. The palm flowers were found to house unique communities of yeast, which facilitate fermentation. Further studies could investigate how much variation there is in yeast communities between flowers. It seems possible that one flower could have significantly higher yeast content and/or activity, and it would be interesting to determine whether these “superbrewers” are more or less attractive to mammalian pollinators. If so, increased fruit set from visitation by the animals could facilitate selection for higher alcohol content, but only if some heritable trait was the cause of the increased yeast activity. While the results of this study are significant and intriguing, I wonder whether alcohol is the only substance attracting the mammals to this palm species. The authors did not do a detailed nutritional analysis of the nectar, so we do not know if there are other compounds present—such as special amino acids or lipids—which could make this species especially desirable for small mammals. The authors are highly interested in the role of alcohol ingestion in primate evolution, and point to the treeshrew as an important model because of its basal position on the evolutionary “branch” leading to primates. What, however, is the significance of the fact that the loris—which also feeds upon the Bertram palm— shows markedly elevated EtG levels, even though they are not quite as high as those of treeshrews. Is this because the loris is less specialized on the palm, or because it metabolizes the alcohol differently, or some other explanation? The loris is more closely related to hominid primates than the treeshrew, so it seems that the comparison between an extremely basal species and a more derived one is a topic deserving of further discussion, in the context of a the evolutionary implications of this plant-animal mutualism. Lastly, how costly is it for the plant to produce this nectar? The yeast communities perform the fermentation, but is there any metabolic cost to the plant itself for playing host to the brewery? The unusual nectar production cycle—with over a month of available nectar, followed by a longer period of “cutting off the tap” makes this a fascinating system. What happens to those yeast communities when nectar is unavailable? Cost-benefit analysis is important when studying co-evolution between plants and animals. While insect pollinators get most of the coverage in discussion of plant-animal mutualisms, this fascinating study showed that vertebrates are effective pollinators for the Bertram palm, and hopefully it will inspire further studies would be useful to provide more detailed insights into the dynamics of this mutualism. Refs:Dudley, R. 2002. Fermenting fruit and the historical ecology of ethanol ingestion: is alcoholism in modern humans an evolutionary hangover? Addiction 97: 381-388.Milton, K. 2004. Ferment in the family tree: does a frugivorous dietary heritage influence contemporary patterns of human ethanol use? Integrative and Comparative Biology 44: 304-314.Morris, S., D. Humphreys, and D. Reynolds. 2006. Myth, marula, and elephant: an assessment of voluntary ethanol intoxication of the African elephant (Loxodonta Africana) following feeding on the fruit of the Marula tree (Sclerocarya birrea). Sanchez, F., C. Korine, B. Pinshow, and R. Dudley. 2004. The possible roles of ethanol and the relationship between plants and frugivores: first experiments with Egyptian fruit bats. Integrative and Comparative Biology 44: 290-294.
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Wiens, F., Zitzmann, A., Lachance, M., Yegles, M., Pragst, F., Wurst, F., von Holst, D., Guan, S., & Spanagel, R. (2008) Chronic intake of fermented floral nectar by wild treeshrews. Proceedings of the National Academy of Sciences, 105(30), 10426-10431. DOI: 10.1073/pnas.0801628105  

  • April 28, 2010
  • 08:20 PM
  • 53 views

Saving face: Salamanders show why it's important to know thy enemies (from Anne-Marie Hodge's blog)

by Noah Gray in Nothing's Shocking


In the past I have focused on reviewing newly published literature, but I have decided to periodically take a look back at some “classic” zoology papers. Defining “classic” is difficult, I am using the slightly arbitrary criteria that the paper has been cited over 100 times, in addition to the very arbitrary and slightly self-centered criteria that the paper was published before the year of my birth, 1986. So, without further adieu, I bring you discussion of a fascinating paper 1981 paper by Robert G. Jaeger, who has now spent over 40 years studying the ecology of red-backed salamanders.Amphibians are a fascinating group of vertebrates with an amazing diversity of life history strategies. Frogs (Anura) are the best known and most diverse amphibian clade, and salamanders (Caudata) are often overlooked as rather prototypical little vertebrates. Four legs, a tail, rather mundane…or not. In reality this group displays amazing diversity in morphology, ecology, and behavior. Within Caudata, the largest family of salamanders is the Plethodontidae. This family consists of over 350 species species. They range anywhere from 3 to 30 cm long, and have a wide variety of life history strategies as well: some lay eggs in the water and go through an aquatic larval stage, while others are terrestrial, lay their eggs on land and skip the larval stage altogether.Another of their characteristic features: they don’t have lungs. Or gills. How, you ask, does an animal breath without lungs or gills? Salamanders exchange gases through blood vessels in their skin, a strategy known as cutaneous respiration that is (hopefully) a common-knowledge characteristic of amphibians. Although “breathing through the skin” is not unique to plethodontids, the total loss of the lungs is considered a key diagnostic feature of this clade. The exact mechanism of how this evolved (adaptations to cool streams, or other ecological conditions? allowing room the hyobranchial structure for extended tongue protrusion?) is apparently the subject of much controversy.Plethodontids have another extremely interesting anatomical feature, and it is the main topic of this post. They have nasolabial grooves, which stretch from each nostril to the lip of the upper jaw. These may seem like just a structural feature, but they are actually part of a sophisticated chemosensory system. The salamanders press their snouts against things as they forage, which causes fluid to move up the grooves into the nostrils and nasal chambers, and in the process if passes over the vomeronasal organ. This organ (aka Jacobson’s Organ), most popularly recognized in snakes’ tongue-flicking behavior, is actually common among the vertebrates (including humans). This allows salamanders to both track prey and detect pheromones from other members of their species, key for mating success.So, the sensory physiology of plethodontids is extremely interesting. These are the only salamanders that have such a large morphological structure devoted to both inter- and intra-specific chemical detection. But what is even more fascinating is how their behavior is linked to this physiology. This species is very territorial, and resident males will attack and bite any other males that intrude upon their home range. A study on aggression in the red-backed salamander ( Plethodon cinereus ) revealed an specific and severe risk incurred during fights between males over territory.Bites to the body can scare males away and bites to the tail can cause autotomization, but these problems are of little concern compared to what can happen if bites are aimed at the face. Males appear to attempt to direct their attacks at their opponent’s snouts, specifically the parts of the face that house the nasolabial grooves. Damage to the snout can diminish the sensory capabilities facilitated by the grooves, and this has dire consequences for the unlucky males. In his 1981 study, Jaeger found that undamaged males caught an average of 18.6 flies in a 2 hour period, while individuals with scarred snouts caught only 5.8. This has huge implications for a male’s survival, reproductive success, and ability to defend his own territories.Obviously there is a huge risk in engaging in territorial battles. If you are constantly bickering with your neighbor over boundary disputes, the probability of recieving a nasty bite to the snout is relatively high. So what is a self-respecting male salamander to do? It is thought that this situation has led to something called “dear enemy recognition.” This basically means that the salamanders detect and recognize the pheromone signals of “familiar” individuals that hold adjacent territories. These neighbors are always close, so it would be a waste of energy to attack them every time they are detected nearby. Salamanders recognize the signals of neighbors, and can also recognize a new, unfamiliar individual as an “intruder” worthy of attack. This allows them to prioritize their fighting efforts and minimize their number of aggressive encounters, and thus their risk of receiving crippling bites to their precious chemosensory organs.The moral of this story: “know thine enemies,” and be careful where you stick your nasolabial grooves.(This post is an revisited/edited version of a write-up of this paper from my previous blog, Pondering Pikaia)
... Read more »

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