Star Trek wouldn’t have been possible without the universal translator. Who would want to watch a show where characters don’t understand each other – of course, that doesn’t stop people from watching political debates. The technology of a universal translator is easy, we have camera phones that will show you a foreign sign in your own language. It’s the software to decipher a previously unencountered language that’s proving tough to overcome. Are there any uni........ Read more »
Sproat, R. (2014) A statistical comparison of written language and nonlinguistic symbol systems. Language, 90(2), 457-481. DOI: 10.1353/lan.2014.0031
Dunn, M., Greenhill, S., Levinson, S., & Gray, R. (2011) Evolved structure of language shows lineage-specific trends in word-order universals. Nature, 473(7345), 79-82. DOI: 10.1038/nature09923
Rao, R., Yadav, N., Vahia, M., Joglekar, H., Adhikari, R., & Mahadevan, I. (2009) Entropic Evidence for Linguistic Structure in the Indus Script. Science, 324(5931), 1165-1165. DOI: 10.1126/science.1170391
Snyder, Benjamin, Regina Barzilay and Kevin Knight. (2010) A Statistical Model for Lost Language Decipherment. Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics, ACL 2010. info:/
This probably would have best been posted a few days ago, but this week is computer science education week, or "code week" (coding just means writing computer programs). From December 9th to the 15th, over a million people all over the US are promoting computer science for students ranging from elementary school to college, as well as those of us finished with school. This is not only really cool because it is generating enthusiasm for computer science education, but it is also provi........ Read more »
Libeskind-Hadas R, & Bush E. (2013) A first course in computing with applications to biology. Briefings in bioinformatics, 14(5), 610-7. PMID: 23449003
Steps 1 and 2 of neuron-building, as well as an important set of shortcuts can be found in the How to Build a Neuron index. Step 3 is deciding which simulation software or programming language you want to use. Simulated Neuron in Genesis (source)The big two are Genesis and Neuron. They are pretty similar in a lot of ways, but Genesis runs in Linux and Neuron runs in windows. However, you can run Genesis in windows if you install the Linux environment Cygwin.Both programs can read in morphologica........ Read more »
Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US.... (2010) NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS computational biology, 6(6). PMID: 20585541
The future of space travel, artificial intelligence, and AI are dependent upon our ability to store massive amounts of data in really small areas. It’s a complex undertaking to say the least. Fortunately, new research indicates that we may get there a bit faster by enabling engineers to discover defects that lead to memory defects [...]... Read more »
Lee, I., Obukhov, Y., Xiang, G., Hauser, A., Yang, F., Banerjee, P., Pelekhov, D., & Hammel, P. (2010) Nanoscale scanning probe ferromagnetic resonance imaging using localized modes. Nature, 466(7308), 845-848. DOI: 10.1038/nature09279
Chia, H., Guo, F., Belova, L., & McMichael, R. (2012) Nanoscale Spin Wave Localization Using Ferromagnetic Resonance Force Microscopy. Physical Review Letters, 108(8). DOI: 10.1103/PhysRevLett.108.087206
As computer scientists this year celebrate the 100th anniversary of the birth of the mathematical genius Alan Turing, who set out the basis for digital computing in the 1930s to anticipate the electronic age, they still quest after a machine as adaptable and intelligent as the human brain. Now, computer scientist Hava Siegelmann of the [...]... Read more »
Cabessa, J., & Siegelmann, H. (2012) The Computational Power of Interactive Recurrent Neural Networks. Neural Computation, 24(4), 996-1019. DOI: 10.1162/NECO_a_00263
Solar storm data has recently been translated through a process called sonification into audio. CERN uses this technology too. Here are videos and explanations for both.... Read more »
Alberto de Campo, Natascha Hormann, Harald Markum, Willibald Plessas, & Bianka Sengi. (2005) Sonification of lattice data: The spectrum of the Dirac operator across the deconfinement transition. Proceedings of Science. info:other/PoS: LAT2005-152
Katharina Vogt, Robert H¨oldrich, David Pirr`o, Martin Rumori, Stefan Rossegger, Werner Riegler, & Matevˇz Tadel. (2010) A SONIC TIME PROJECTION CHAMBER. SONIFIED PARTICLE DETECTION AT CERN. International Conference on Auditory Display. info:other/ISBN: 0-9670904-3-1
As you know, my post-doc in Uppsala ended. It was a good time, and it was great collaborating on Bioclipse with Ola, Jonathan, Arvid, and Carl. I would have loved tighter integration with the work of Maris and Martin, but that was limited to one joined paper (in press). I thank Professors Jarl Wikberg and Eva Brittebo for allowing me to continue my research at their department, and hope this is not the end of the collaboration yet.
Like with new year, the end of a contract is a good time to ref........ Read more »
Wagener, J., Spjuth, O., Willighagen, E., & Wikberg, J. (2009) XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services. BMC Bioinformatics, 10(1), 279. DOI: 10.1186/1471-2105-10-279
Spjuth, O., Alvarsson, J., Berg, A., Eklund, M., Kuhn, S., Mäsak, C., Torrance, G., Wagener, J., Willighagen, E., Steinbeck, C.... (2009) Bioclipse 2: A scriptable integration platform for the life sciences. BMC Bioinformatics, 10(1), 397. DOI: 10.1186/1471-2105-10-397
Spjuth, O., Willighagen, E., Guha, R., Eklund, M., & Wikberg, J. (2010) Towards interoperable and reproducible QSAR analyses: Exchange of datasets. Journal of Cheminformatics, 2(1), 5. DOI: 10.1186/1758-2946-2-5
One of the many tools we use in our team to manage the development of ChEBI software is an automated build tool called Apache Maven. Opinions are often divided on whether Maven is a good or a bad thing. Most of them are very subjective, argumentative and often very extended. See why does maven have [...]... Read more »
Stroustrup, B. (2010) Viewpoint: What should we teach new software developers? Why?. Communications of the ACM, 53(1), 40. DOI: 10.1145/1629175.1629192
Bjarne Stroustrup. (2007) Evolving a language in and for the real world: C 1991-2006. Proceedings of the third ACM SIGPLAN conference on History of programming languages. DOI: 10.1145/1238844.1238848
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