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  • September 23, 2016
  • 07:00 AM
  • 75 views

Friday Fellow: Rosy Crust

by Piter Boll in Earthling Nature

by Piter Kehoma Boll If you are walking through a forest in Europe you may find the bark of some trees covered by a thin rosy or orange crust. Commonly known as rosy crust, its scientific name is Peniophora incarnata. As … Continue reading →... Read more »

Lee, H., Yun, S., Jang, S., Kim, G., & Kim, J. (2015) Bioremediation of Polycyclic Aromatic Hydrocarbons in Creosote-Contaminated Soil by Peniophora incarnata KUC8836. Bioremediation Journal, 19(1), 1-8. DOI: 10.1080/10889868.2014.939136  

Suay, I., Arenal, F,, Asensio, F. J., Basilio, A., Cabello, M. A., Díez, M. T., García, J. B., González del Val, A., Gorrochategui, J., Hernández, P.... (2000) Screening of basidiomycetes for antimicrobial activities. Antonie van Leeuwenhoek, 78(2), 129-140. DOI: 10.1023/A:1026552024021  

  • September 16, 2016
  • 07:00 AM
  • 128 views

Friday Fellow: Samambaiaçu

by Piter Boll in Earthling Nature

by Piter Kehoma Boll It’s more than time to bring a fern as a Friday Fellow, and I decided to start with one of my favorites, the Neotropical tree fern Dicksonia sellowiana, known in Brazil as Samambaiaçu or Xaxim. The samambaiaçu … Continue reading →... Read more »

  • September 1, 2016
  • 10:19 AM
  • 217 views

Responsible resurrection: The ecology of de-extinction

by gdw in FictionalFieldwork

March of the mammoths Improvements in our genetic tinkering capabilities have led several people to suggest potential uses for our newfound powers. Although we ought to add some nuance and note that those powers are still in development. In any case, one of those powers is quite impressive. De-extinction, or the process of bringing back […]... Read more »

Seddon PJ, Griffiths CJ, Soorae PS, & Armstrong DP. (2014) Reversing defaunation: restoring species in a changing world. Science, 345(6195), 406-12. PMID: 25061203  

McCauley, D., Hardesty-Moore, M., Halpern, B., & Young, H. (2016) A mammoth undertaking: harnessing insight from functional ecology to shape de-extinction priority setting. Functional Ecology. DOI: 10.1111/1365-2435.12728  

  • August 12, 2016
  • 07:00 AM
  • 147 views

Friday Fellow: Jataí Bee

by Piter Boll in Earthling Nature

by Piter Kehoma Boll Certainly the most widespread, adaptable and well-known honey-producing bee is Apis melifera, commonly known as honeybee for obvious reasons. But there are a lot of other honey makers all over the world. Today I’m going to present … Continue reading →... Read more »

Miorin, P., Levy Junior, N., Custodio, A., Bretz, W., & Marcucci, M. (2003) Antibacterial activity of honey and propolis from Apis mellifera and Tetragonisca angustula against Staphylococcus aureus. Journal of Applied Microbiology, 95(5), 913-920. DOI: 10.1046/j.1365-2672.2003.02050.x  

Sawaya, A., Cunha, I., Marcucci, M., de Oliveira Rodrigues, R., & Eberlin, M. (2006) Brazilian Propolis of Tetragonisca angustula and Apis mellifera. Apidologie, 37(3), 398-407. DOI: 10.1051/apido:2006011  

  • August 5, 2016
  • 07:00 AM
  • 337 views

Friday Fellow: Beggar’s tick

by Piter Boll in Earthling Nature

by Piter Kehoma Boll What if the cure for cancer has been living in your garden all this time and you have been trying to get rid of it because it is an annoying weed? I cannot assure you that … Continue reading →... Read more »

Chang, J., Chiang, L., Chen, C., Liu, L., Wang, K., & Lin, C. (2001) Antileukemic Activity of Bidens pilosa L. var. minor (Blume) Sherff and Houttuynia cordata Thunb. The American Journal of Chinese Medicine, 29(02), 303-312. DOI: 10.1142/S0192415X01000320  

Chiang, L., Chang, J., Chen, C., Ng, L., & Lin, C. (2003) Anti-Herpes Simplex Virus Activity of Bidens pilosa and Houttuynia cordata. The American Journal of Chinese Medicine, 31(03), 355-362. DOI: 10.1142/S0192415X03001090  

Kviecinski, M., Felipe, K., Schoenfelder, T., de Lemos Wiese, L., Rossi, M., Gonçalez, E., Felicio, J., Filho, D., & Pedrosa, R. (2008) Study of the antitumor potential of Bidens pilosa (Asteraceae) used in Brazilian folk medicine. Journal of Ethnopharmacology, 117(1), 69-75. DOI: 10.1016/j.jep.2008.01.017  

  • July 21, 2016
  • 10:08 AM
  • 395 views

The decline of biodiversity: Past the point of no return?

by gdw in FictionalFieldwork

Mohi looks up at her mother. Confused. Afraid. Mother had always said that she had to keep her filtration veil on when they left their housedome. But now, here stood her mother, unveiled. The woman gifted an encouraging nod to her young daughter. Mohi removed her veil. Air! Light! The freshness of the breeze and […]... Read more »

Steffen W, Richardson K, Rockström J, Cornell SE, Fetzer I, Bennett EM, Biggs R, Carpenter SR, de Vries W, de Wit CA.... (2015) Sustainability. Planetary boundaries: guiding human development on a changing planet. Science, 347(6223). PMID: 25592418  

Newbold T, Hudson LN, Arnell AP, Contu S, De Palma A, Ferrier S, Hill SL, Hoskins AJ, Lysenko I, Phillips HR.... (2016) Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment. Science, 353(6296), 288-91. PMID: 27418509  

Oliver TH. (2016) How much biodiversity loss is too much?. Science, 353(6296), 220-1. PMID: 27418489  

  • May 18, 2016
  • 09:36 AM
  • 386 views

Video Tip of the Week: JGI user meeting videos, and MetaSUB

by Mary in OpenHelix

This week’s Video Tip of the Week is actually a whole bunch of videos. Although I’ll highlight one here as our tip, there are many great talks from the recent JGI Genomics of Energy & Environment meeting. Although typically we focus on specific software tools for our tips, I think this is a nice case […]... Read more »

Afshinnekoo, E., Meydan, C., Chowdhury, S., Jaroudi, D., Boyer, C., Bernstein, N., Maritz, J., Reeves, D., Gandara, J., Chhangawala, S.... (2015) Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics. Cell Systems, 1(1), 72-87. DOI: 10.1016/j.cels.2015.01.001  

Alexa B.R. McIntyre, Lindsay Rizzardi, Angela M Yu, Gail L. Rosen, Noah Alexander, Douglas J. Botkin, Kristen K. John, Sarah L. Castro-Wallace, Aaron S. Burton, Andrew Feinberg.... (2015) Nanopore Sequencing in Microgravity. bioRxiv. DOI: 10.1101/032342  

  • May 13, 2016
  • 02:25 AM
  • 327 views

Friday the 13th

by Aurametrix team in Environmental health

Our health depends on a multitude of environmental factors, day in and day out. And today is a special day - Friday the 13th. How should you feel on this day? Friday the 13th is one of the most feared dates, associated with bad luck in the West. And it is taken cautiously even in cultures that do not fear the 13th - for example, among Chinese mothers avoiding delivering their babies on the 13th. But science says that those born on the 13th and even those born on Friday the 13th are not in ........ Read more »

Fidrmuc, J., & Tena, J. (2015) Friday the 13th: The Empirics of Bad Luck. Kyklos, 68(3), 317-334. DOI: 10.1111/kykl.12085  

Lucey, B. (2002) Friday the 13th and the Philosophical Basis of Financial Economics. SSRN Electronic Journal. DOI: 10.2139/ssrn.962697  

Chung, R., Darrat, A., & Li, B. (2014) Superstitions and stock trading: some new evidence. Journal of the Asia Pacific Economy, 19(4), 527-538. DOI: 10.1080/13547860.2014.920589  

Stone, A., Schneider, S., & Harter, J. (2012) Day-of-week mood patterns in the United States: On the existence of ‘Blue Monday’, ‘Thank God it's Friday’ and weekend effects. The Journal of Positive Psychology, 7(4), 306-314. DOI: 10.1080/17439760.2012.691980  

Almond D, Chee CP, Sviatschi MM, & Zhong N. (2015) Auspicious birth dates among Chinese in California. Economics and human biology, 153-9. PMID: 26160600  

  • February 29, 2016
  • 11:45 PM
  • 509 views

From Limping to Leaping

by Aurametrix team in Environmental health

"Anno bisesto, anno funesto” (leap year, gloomy year), say Italians. “Leap year was ne’er a good sheep year” agrees an old Scottish proverb. "Високосный год "Урожай" соберет" (leap year will gather the "Harvest") warns a Russian saying implying that there will be plenty of disasters - calamities, catastrophes and cataclysms. But usually there are not.​ Leap years tend to be good for stocks (with the exception of the recent crashes in 2000 and 2008), al........ Read more »

Neumann, P. (1992) Leap-year problems. Communications of the ACM, 35(6), 162. DOI: 10.1145/129888.129900  

Cohen CF, & Bachofer HJ. (1980) Hospital indicators: leap year distorts February statistics. Hospitals, 54(11), 43-6. PMID: 7372291  

  • February 28, 2016
  • 08:35 AM
  • 725 views

Week 8 In Review: Open-Access Science | 22 to 28 Feb

by TakFurTheKaffe in Tak Fur The Kaffe

Sea level rose faster in the 20th century than in any other century of the last 3,000 years, new methods for estimating future sea level rise and heat waves, consumers to blame for their carbon footprint, and new virtual forests predict future impacts of climate change. Here are five of the latest scientific studies published open-access this week.... Read more »

Kopp, R., Kemp, A., Bittermann, K., Horton, B., Donnelly, J., Gehrels, W., Hay, C., Mitrovica, J., Morrow, E., & Rahmstorf, S. (2016) Temperature-driven global sea-level variability in the Common Era. Proceedings of the National Academy of Sciences, 201517056. DOI: 10.1073/pnas.1517056113  

Mengel, M., Levermann, A., Frieler, K., Robinson, A., Marzeion, B., & Winkelmann, R. (2016) Future sea level rise constrained by observations and long-term commitment. Proceedings of the National Academy of Sciences, 201500515. DOI: 10.1073/pnas.1500515113  

Ivanova, D., Stadler, K., Steen-Olsen, K., Wood, R., Vita, G., Tukker, A., & Hertwich, E. (2015) Environmental Impact Assessment of Household Consumption. Journal of Industrial Ecology. DOI: 10.1111/jiec.12371  

Liénard, J., & Strigul, N. (2016) An individual-based forest model links canopy dynamics and shade tolerances along a soil moisture gradient. Royal Society Open Science, 3(2), 150589. DOI: 10.1098/rsos.150589  

  • January 29, 2016
  • 12:25 AM
  • 531 views

European killer whales face extinction due to banned pollutants

by TakFurTheKaffe in Tak Fur The Kaffe

Levels of the toxic compound PCBs in the marine environment are now so high that they threaten the very existence of some of Europe’s top sea predators, suggests new research. ... Read more »

Jepson, P., Deaville, R., Barber, J., Aguilar, �., Borrell, A., Murphy, S., Barry, J., Brownlow, A., Barnett, J., Berrow, S.... (2016) PCB pollution continues to impact populations of orcas and other dolphins in European waters. Scientific Reports, 18573. DOI: 10.1038/srep18573  

  • January 17, 2016
  • 10:00 AM
  • 635 views

Week Two In Review: Open-Access Science | 11 to 17 Jan

by TakFurTheKaffe in Tak Fur The Kaffe

The world’s largest canyon discovered hidden under the Antarctic ice, citizen science is on the up, new genetic secrets of Ötzi Iceman, and the social lives of chimps. Here are 5 of the latest scientific studies published open-access this week.... Read more »

Jamieson, S., Ross, N., Greenbaum, J., Young, D., Aitken, A., Roberts, J., Blankenship, D., Bo, S., & Siegert, M. (2015) An extensive subglacial lake and canyon system in Princess Elizabeth Land, East Antarctica. Geology. DOI: 10.1130/G37220.1  

Moeller, A., Foerster, S., Wilson, M., Pusey, A., Hahn, B., & Ochman, H. (2016) Social behavior shapes the chimpanzee pan-microbiome. Science Advances, 2(1). DOI: 10.1126/sciadv.1500997  

Coia, V., Cipollini, G., Anagnostou, P., Maixner, F., Battaggia, C., Brisighelli, F., Gómez-Carballa, A., Destro Bisol, G., Salas, A., & Zink, A. (2016) Whole mitochondrial DNA sequencing in Alpine populations and the genetic history of the Neolithic Tyrolean Iceman. Scientific Reports, 18932. DOI: 10.1038/srep18932  

Engelmann, J., & Herrmann, E. (2016) Chimpanzees Trust Their Friends. Current Biology. DOI: 10.1016/j.cub.2015.11.037  

  • December 10, 2015
  • 08:02 AM
  • 710 views

The Serengeti at a crossroads

by naturallyspeakingpodcast in Naturally Speaking Podcast

Is there a better option to paving a highway through the middle of the Serengeti and disrupting the greatest land migration on Earth? The conflict between conservation and development is something we have touched on at Naturally Speaking before—here at the Institute our researchers understand that a fine balance between the two must be achieved. However, […]

... Read more »

  • October 26, 2015
  • 01:25 AM
  • 894 views

A week in review: Top open-access science stories

by Cath Jex in Tak Fur The Kaffe

There's simply not enough time in the week to write about everything that I'd like! So here are 6 extra short summaries of scientific studies published during the past week, available free via open-access journals for anyone and everyone to read and enjoy!... Read more »

Luo J, Ault JS, Shay LK, Hoolihan JP, Prince ED, Brown CA, & Rooker JR. (2015) Ocean Heat Content Reveals Secrets of Fish Migrations. PloS one, 10(10). PMID: 26484541  

Lively, J. (2015) A new species of baenid turtle from the Kaiparowits Formation (Upper Cretaceous, Campanian) of southern Utah. Journal of Vertebrate Paleontology. DOI: 10.1080/02724634.2015.1009084  

  • September 8, 2015
  • 04:51 PM
  • 774 views

A tale of leeches and imminent nuclear war

by Rosin Cerate in Rosin Cerate

The human experience with leeches typically centers around the unpleasantness of being fed upon, with perhaps a dash of they make good fishing bait or we sometimes use them for medical purposes. Oh, and jokes about medieval doctors being mostly useless. Notably, most leeches don't feed on people, opting instead to harvest the fluids of birds, turtles, fishes, frogs, salamanders, snails, and/or insect larvae. They've definitely found a niche, and boy is it an annoying one.The truth is substantial........ Read more »

  • August 31, 2015
  • 01:43 PM
  • 618 views

The Last Day of Summer

by Aurametrix team in Environmental health

Is that it? Summer is finally over. And so is the sweet melancholy of August, listening to nature sounds - soothing ocean waves or a chorus of crickets while sitting on a porch, sun drying you with warm rays... It's the end of the holiday break.Tomorrow is September, the second most stressful month of the year. It is known for stock market volatility and big financial crashes, strategic planning meetings, storms and tornadoes, hectic days at work, the season of "back to school" and the time for ........ Read more »

Levy, A. (2015) The Night Before the First Day of School. Journal of Clinical Oncology, 33(13), 1509-1510. DOI: 10.1200/JCO.2014.60.5790  

Muehling, D., Sprott, D., & Sprott, D. (2004) THE POWER OF REFLECTION: An Empirical Examination of Nostalgia Advertising Effects. Journal of Advertising, 33(3), 25-35. DOI: 10.1080/00913367.2004.10639165  

  • August 10, 2015
  • 06:25 AM
  • 231 views

Feeling stressed? Visit an aquarium to improve mental wellbeing

by TakFurTheKaffe in Tak Fur The Kaffe

A new study has shown that visiting aquariums and spending time watching fish has benefits for both physical and mental health.... Read more »

Cracknell, D., White, M., Pahl, S., Nichols, W., & Depledge, M. (2015) Marine Biota and Psychological Well-Being: A Preliminary Examination of Dose-Response Effects in an Aquarium Setting. Environment and Behavior. DOI: 10.1177/0013916515597512  

  • July 31, 2015
  • 10:00 AM
  • 1,023 views

How to make rice healthier for you and the environment

by Betty Zou in Eat, Read, Science

An innovative way of cooking rice that removes more arsenic than the conventional method and a new strain of high-starch, low-methane rice are discussed.... Read more »

  • July 20, 2015
  • 06:25 AM
  • 257 views

Everything changes: Will our oceans enter into a new biological regime?

by Cath Jex in Tak Fur The Kaffe

The oceans may be headed into a new biological regime, where marine organisms take less carbon dioxide out of the atmosphere and reduce the ocean’s ability to mitigate the effects of global change.... Read more »

  • July 15, 2015
  • 03:03 PM
  • 810 views

Journal Club: Starlings on Prozac: How pharmaceuticals may affect wildlife

by GrrlScientist in Maniraptora

SUMMARY: Recent research suggests that the commonly prescribed psychiatric drug, Prozac, occurs at environmentally relevant concentrations that can significantly alter behaviour and physiology in wild birds .. Read more... Read more »

Bean, T., Boxall, A., Lane, J., Herborn, K., Pietravalle, S., & Arnold, K. (2014) Behavioural and physiological responses of birds to environmentally relevant concentrations of an antidepressant. Philosophical Transactions of the Royal Society B: Biological Sciences, 369(1656), 20130575-20130575. DOI: 10.1098/rstb.2013.0575  

Crockett, M., Siegel, J., Kurth-Nelson, Z., Ousdal, O., Story, G., Frieband, C., Grosse-Rueskamp, J., Dayan, P., & Dolan, R. (2015) Dissociable Effects of Serotonin and Dopamine on the Valuation of Harm in Moral Decision Making. Current Biology, 25(14), 1852-1859. DOI: 10.1016/j.cub.2015.05.021  

Markman, S., Müller, C., Pascoe, D., Dawson, A., & Buchanan, K. (2011) Pollutants affect development in nestling starlings Sturnus vulgaris. Journal of Applied Ecology, 48(2), 391-397. DOI: 10.1111/j.1365-2664.2010.01931.x  

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