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  • September 2, 2010
  • 12:55 PM
  • 1 view

The Science of Sexism: Primate Behavior and the Culture of Sexual Coercion

by Eric Michael Johnson in The Primate Diaries in Exile

The latest stop in the #PDEx tour is being hosted by The Intersection at Discover magazine.Despite the advances our society has made for women’s rights and sexual equality during the last century this example is just one more sign of how far we still have to go. It’s not an isolated incident. According to statistics compiled by the US Equal Employment Opportunity Commission there were 12,696 workplace sexual harassment cases filed in 2009 (which would be a fraction of the number that actually occurred) and 84% of these cases were brought by women. Businesses have gotten increasingly serious about cracking down on such abuses but last year they were still held liable to the tune of $51.5 million, the largest figure since 2001. What is going on here? Could this kind of gender inequality be an intrinsic feature of human nature that we’re stuck with or is it simply a failure to create an environment that prevents such behaviors from reoccurring?Primatologists and evolutionary biologists have taken this question seriously and have developed some surprising conclusions that could inform our approach to this issue. Unlike Randy Thornhill and Craig Palmer’s book A Natural History of Rape, a thesis that was criticized by scholars both in biology and gender studies, other evolutionary researchers have developed a much more balanced analysis. One example is from the recent edited volume Sexual Coercion in Primates and Humans by Martin Muller and Richard Wrangham. As they wrote in their introduction:[M]ales in a number of primate species appear to use force, or the threat of force, to coerce unwilling females to mate with them. . . Although the utility of this distinction has been disputed, there is no doubt that sexual coercion is a potentially important mechanism of mating bias within the broad framework of sexual conflict theory.Read the rest of the post here and stay tuned for next week's post hosted by Sex at Dawn at Psychology Today magazine.Reference:Martin N. Muller and Richard W. Wrangham (2009). Sexual Coercion in Primates and Humans: An Evolutionary Perspective on Male Aggression Against Females Harvard University Press... Read more »

Martin N. Muller and Richard W. Wrangham. (2009) Sexual Coercion in Primates and Humans: An Evolutionary Perspective on Male Aggression Against Females. Harvard University Press. info:/

  • September 2, 2010
  • 12:14 PM
  • 11 views

How To Fight Loneliness

by Rob Mitchum in ScienceLife

Loneliness is bad for your health. The work of John Cacioppo and others has proven this connection repeatedly over the last decade, finding links between loneliness and blood pressure, sleep quality, dementia, gene expression, and many other medical measures. The evidence has built to the point that loneliness could be considered a serious risk factor [...]... Read more »

Masi CM, Chen HY, Hawkley LC, & Cacioppo JT. (2010) A Meta-Analysis of Interventions to Reduce Loneliness. Personality and social psychology review : an official journal of the Society for Personality and Social Psychology, Inc. PMID: 20716644  

  • September 2, 2010
  • 12:08 PM
  • 10 views

Diabetes drug may protect against cancer

by Sally Church in Pharma Strategy Blog

Yesterday, I covered some of the key pathways and kinases associated with cell energy metabolism, LKB1 and AMPK. These, together with Insulin-like Growth Factor-I (IGF-I) and the insulin receptor (IR), appear to play important roles in the broader regulation of...... Read more »

  • September 2, 2010
  • 12:01 PM
  • 11 views

Evolution of cerebral cortex traced back to Precambrian era

by Eva Amsen in the Node

In a paper published today in Cell, Detlev Arendt, Raju Tomer and colleagues reveal evidence that the cerebral cortex evolved much earlier than previously believed. Using a new technique to detect and image simultaneously expressed genes in a compact brain area, they discovered that the gene expression patterns in the olfactory processing region (mushroom bodies) [...]... Read more »

Raju Tomer, Alexandru S. Denes, Kristin Tessmar-Raible, & Detlev Arendt. (2010) Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium. Cell, 142(5), 800-809. info:/10.1016/j.cell.2010.07.043

  • September 2, 2010
  • 11:02 AM
  • 9 views

War & Fish

by Journal Watch Online in Journal Watch Online

War isn’t the answer — but it wasn’t so bad if you were a Scottish haddock. A 6-year pause in commercial fishing caused by World War II helped cod, haddock and whiting populations in Europe’s North Sea recover from years of pre-war exploitation, according to a new analysis. The “accidental” reserve suggests that cold-water fish […] Read More »... Read more »

  • September 2, 2010
  • 09:50 AM
  • 18 views

Say Hello to Sinoceratops

by Brian Switek in Dinosaur Tracking

It has been a good year for horned dinosaurs. The recent description of Mojoceratops, the discovery of a ceratopsian in Europe, and the long-awaited publication of the New Perspectives on Horned Dinosaurs volume have all given paleontologists reason to celebrate, and a new study led by Xu Xing reports on another significant discovery: the first [...]... Read more »

  • September 2, 2010
  • 09:47 AM
  • 17 views

Immunity under natural selection

by iayork in Mystery Rays from Outer Space

HapMap 3, officially announced in today’s issue of Nature,1 is an “integrated data set of common and rare alleles” in human populations, built from “1.6 million common single nucleotide polymorphisms (SNPs) in 1,184 reference individuals from 11 global populations“.  As well as being a resource for genome-wide studies, there are a number of things that can [...]... Read more »

Douroudis K, Kingo K, Silm H, Reimann E, Traks T, Vasar E, & Kõks S. (2010) The CD226 Gly307Ser gene polymorphism is associated with severity of psoriasis. Journal of dermatological science, 58(2), 160-1. PMID: 20399620  

Maiti AK, Kim-Howard X, Viswanathan P, Guillén L, Qian X, Rojas-Villarraga A, Sun C, Cañas C, Tobón GJ, Matsuda K.... (2010) Non-synonymous variant (Gly307Ser) in CD226 is associated with susceptibility to multiple autoimmune diseases. Rheumatology (Oxford, England), 49(7), 1239-44. PMID: 20338887  

Heron M, Grutters JC, Van Moorsel CH, Ruven HJ, Kazemier KM, Claessen AM, & Van den Bosch JM. (2009) Effect of variation in ITGAE on risk of sarcoidosis, CD103 expression, and chest radiography. Clinical immunology (Orlando, Fla.), 133(1), 117-25. PMID: 19604725  

Luke MM, O'Meara ES, Rowland CM, Shiffman D, Bare LA, Arellano AR, Longstreth WT Jr, Lumley T, Rice K, Tracy RP.... (2009) Gene variants associated with ischemic stroke: the cardiovascular health study. Stroke; a journal of cerebral circulation, 40(2), 363-8. PMID: 19023099  

  • September 2, 2010
  • 09:32 AM
  • 21 views

Briefings in Bioinformatics – our education paper is available now

by Jennifer in OpenHelix

Back in April I happened to mention that we (OpenHelix) were writing a paper on informal sources of bioinformatics education (in a Friday SNPets item) and we were asked to announce when the paper came out. Well, we got word late last week that the article has been published. The article appears in a special issue of Briefings in Bioinformatics that is devoted to bioinformatics education. I’m not sure if all the articles in the issue are available yet, but it looks like several are in the journal’s Advanced Access area. Bioinformatics education is an area (obviously) that OpenHelix cares deeply about & we are anxiously awaiting our copies of the full issue so we can read all the articles, but I digress…
The title “OpenHelix: bioinformatics education outside of a different box” was a cool suggestion from one of the article’s reviewers – my original title was much tamer (ok, more boring). Regardless of the final title, what we wanted to do in the article is to discuss informal sources of bioinformatics education. By education we do mean acquiring applicable information that allows a researcher to operate within the field of bioinformatics. By informal we mean outside of traditional, credit based classes and degrees. Essentially we provide a bit of the knowledge and know-how that we’ve gathered over years of working with hundreds of resources, thousands of workshop attendees, and countless online contacts about where a researcher, or librarian, or whoever can turn for various informational needs in the field of bioinformatics.
Our contention is that not everyone needs to program in order to manage and manipulate their biological data these days. There are SO many fine publicly available databases, algorithms, tools and more, it is just a matter of awareness and training for anyone to be able to reformat and analyze their personal data sets. We maintain that :
…bioinformatics education needs to do a minimum of four things:
1. raise awareness of the available resources
2. enable researchers to find and evaluate resource functionality
3. lower the barrier between awareness and use of a resource
4. support the continuing educational needs of regular resource users
In the paper we walk through each of these – we first describe example needs associated with the point, and then cover possible informal resources that meet the needs. The article includes tables of resources and links to them and many many references. We really hope that is a very useful resource in the field of bioinformatics education.  I am already looking forward to contributing to the next special education issue, both to hone my writing skills and to extend the information we can provide readers. Please do comment, email, whatever and let us know about the resources that you use, what you learned from the article, etc. Oh, here’s the citation info:

Williams, J., Mangan, M., Perreault-Micale, C., Lathe, S., Sirohi, N., & Lathe, W. (2010). OpenHelix: bioinformatics education outside of a different box Briefings in Bioinformatics DOI: 10.1093/bib/bbq026


... Read more »

Williams, J., Mangan, M., Perreault-Micale, C., Lathe, S., Sirohi, N., & Lathe, W. (2010) OpenHelix: bioinformatics education outside of a different box. Briefings in Bioinformatics. DOI: 10.1093/bib/bbq026  

  • September 2, 2010
  • 07:10 AM
  • 25 views

Alfred Russel Wallace, a Conspicuous Caterpillar and David Bowie

by Johnny in Ecographica

What do Alfred Wallace and David Bowie have in common with a caterpillar? …in this work, Wallace expanded on one of his theories - a theory that he had previously presented to Charles Darwin and to members of the Entomological Society of London… Aposematism refers to signaling adaptations…... Read more »

  • September 2, 2010
  • 01:56 AM
  • 27 views

Queen of the Hormones and the Challenge Hypothesis

by Michael Gutbrod in A Scientific Nature

Just imagine dozens of hormonally driven females all fighting to be the queen. Sounds sexy, right? Those of us males who enjoy the occasional ovary-charged confrontation (I believe the proper term is cat-fight), might want to head out to the backyard and hunt for a wasp’s nest (and if you are still in fantasy land [...]... Read more »

  • September 1, 2010
  • 08:41 PM
  • 29 views

New land for agriculture coming mainly at the expense of tropical ecosystems

by Phil Camill in Global Change: Intersection of Nature and Culture


There have traditionally been two ways to produce more food for an increasing population:  Convert native ecosystems like forests and grasslands into agricultural fields (what we call “extensification”) or make the yields on existing croplands go up, through the use of things like machinery, fertilizers, irrigation, pesticides, and GMOs (what we call “intensification”).
Historically, these processes [...]... Read more »

H. K. Gibbs, A. S. Ruesch, F. Achard, M. K. Clayton, P. Holmgrene, N. Ramankutty, and J. A. Foley. (2010) Tropical forests were the primary sources of new agricultural land in the 1980s and 1990s. Proceedings of the National Academy of Sciences. info:/

  • September 1, 2010
  • 06:28 PM
  • 38 views

HapMap 3: more people ~ more genetic variation

by Razib Khan in Gene Expression

Across the ~3 billion or so base pairs in the human genome there’s a fair amount of variation. That variation can be partitioned into different classes, somewhat artificial constructions of human categorization systems, but nevertheless mapping on to real demographic or life history events of particular importance. Some of the variation is specific to populations, [...]... Read more »

The International HapMap 3 Consortium. (2010) Integrating common and rare genetic variation in diverse human populations. Nature. info:/10.1038/nature09298

  • September 1, 2010
  • 02:32 PM
  • 34 views

Blood Flow and Fahraeus Effect

by Arunn in Unruled Notebook

The dependence of apparent viscosity of human blood on the capillary size it is flowing through is identified as the Fahraeus-Lindqvist effect (1931). This was explained in the earlier Blood Flow in Capillaries note. There is a related but different effect called the Fahraeus effect (1929). This is the decrease in average concentration of red [...]... Read more »

Sutera, S. P., Seshadri, V., Croce, P. A. and Hochmuth, R. M. (1970) Capillary blood flow: II. Deformable model cells in tube flow. Microvascular Research, 2(4), 420-433. DOI: 10.1016/0026-2862(70)90035-X  

  • September 1, 2010
  • 02:27 PM
  • 33 views

LKB1 is a master kinase in cancer

by Sally Church in Pharma Strategy Blog

"LKB1 is a master kinase" What a great subheader in a paper last year by Reuben Shaw (journal link below). Liver kinase B1 (LKB1) first got my attention at the AACR lung cancer meeting in San Diego earlier this year,...... Read more »

  • September 1, 2010
  • 02:13 PM
  • 43 views

The Stress Symphony a Prelude to Neurogensis et Stress

by neurobites in Neurobites

Hi there! Been a long time eh? Not sure what happened there, but I blame Harry. Somehow, somewhere he was involved. So let’s just jump right into it Stress. Your reason for not calling your mother, a graduate student’s excuse for overeating, not sleeping, forgetting to hand in an abstract, walking into walls and lying [...]... Read more »

Bruce S. McEwen. (2007) Physiology and Neurobiology of Stress and Adaptation: Central Role of the Brain. Physiological Reviews, 873-904. info:/

  • September 1, 2010
  • 02:04 PM
  • 27 views

Prairie Dogs: Small Creatures, Big Vocabulary

by Kari Kenefick in Promega Connections

It is summer, July already! Vacation time for kids and the people that love them. Though many years past, I recall fondly one of our first family trips to the Black Hills of South Dakota. While en route, we stopped in the Badlands National Park. Though the Badlands might appear a barren, treeless desert (and [...]... Read more »

Slobodchikoff CN, Paseka A, & Verdolin JL. (2009) Prairie dog alarm calls encode labels about predator colors. Animal cognition, 12(3), 435-9. PMID: 19116730  

  • September 1, 2010
  • 01:33 PM
  • 42 views

Eat ‘til you can’t eat no more: Evolution of the pig-out

by Zen Faulkes in NeuroDojo

Eating food is a wonderful activity. Without it, you’d die.

But have you ever gone overboard? Got to the end of a meal and thought:


“I ate too much.”

In the natural world, we’re so used to thinking of food as scarce for animals that we don’t often think about issues associated with animals that eat and eat and eat until they do not eat any more. It probably is fairly hard to hit that satiation point for many species.

On the other hand, some species are well known for infrequent but huge meals. They have to eat as much as they can when they can, because their food source is unpredictable. But how do you get to the ability to eat those large meals? We know the “I ate too much” sensation can be uncomfortable, but could it be costly in evolutionary terms?

Pruitt and Krauel decided to look at these issues of gorging in wolf spiders (Schizocosa ocreata). They collected many young female spiders in Tennessee, and reared them in the lab. To test how much the females could eat in one go, they fed them crickets.

A lot of crickets.

After the spiders were not taking any more crickets, they measured the just how much mass the females had taken on in all that feeding. The females varied quite a bit in how much food they could take on, and there is a clear advantage to doing so: their eggs developed faster and they had more of them.

As I alluded to before, Pruitt and Krauel mated their females. They took the offspring and measure how gluttonous they were compared to their mother, and it turns out that the winners of the eating contest tended to have daughters who could also wolf down a lot of food, too. Eating large meals is heritable.

Now we get to the coolest part.

The researcher took those spiders into the wild, and let them loose.

But they didn’t just turn them loose because the experiment was done, oh no. They let them out in to locations in the Tennessee forest. One was covered with nets so that birds – likely the major predators of these spiders – were unlikely to be able to get in.

All their released spiders were marked so they could be identified. Every day for two weeks, they tried to recapture the spiders they released.

When it was all over, they estimated that their eating champions were more likely to survive and have reproductive success but only in environments where the predators had been excluded. In the more naturalistic settings, where birds were free to zip down and conduct their own experiments in how much birds can eat, the heavy eaters suffered: they more likely to have been picked out of the population.

And the moral of the story is: Life is all about trade-offs. Sure, you can take in a lot of energy in one go... that will make you so slow that you can escape when you need to.

Swings and roundabouts, as they say.

Reference

Pruitt JN, & Krauel JJ. 2010. The adaptive value of gluttony: predators mediate the life history
trade-offs of satiation threshold Journal of Evolutionary Biology DOI: 10.1111/j.1420-9101.2010.02070.x

Top photo by robstephaustralia on Flickr; bottom photo by dishevld on Flickr; used under a Creative Commons license.... Read more »

  • September 1, 2010
  • 10:17 AM
  • 70 views

Phenologs and unlikely models

by Eva Amsen in the Node

“You’re probably wondering why I’m here”, were the first words of Edward Marcotte’s talk at the SDB meeting last month. After all, he was about to speak about systems biology in a session on organogenesis. What followed was not only a new way to identify genes involved in developmental processes, but also a perfect example [...]... Read more »

Kriston L. McGary, Tae Joo Park, John O. Woods, Hye Ji Cha, John B. Wallingford, & Edward M. Marcotte. (2010) Systematic discovery of nonobvious human disease models through orthologous phenotypes. PNAS. DOI: 10.1073/pnas.0910200107  

  • September 1, 2010
  • 09:51 AM
  • 26 views

Millipedes and mites do not cospeciate. But do they coevolve?

by Timothée Poisot in Timothée Poisot

Coevolution is a really cool evolutionary process in which a genetically driven change in the phenotype of one species is responsible for a change in the evolutionary pressures on a second species. The term was coined in the 1960s, and the concept (formalized by Janzen in 1980) is receiving an increasing interest ever since. One [...]... Read more »

Janzen, Daniel H. (1980) When is it Coevolution?. Evolution, 34(3). DOI: 10.2307/2408229  

Strauss SY, Sahli H, & Conner JK. (2005) Toward a more trait-centered approach to diffuse (co)evolution. The New phytologist, 165(1), 81-89. PMID: 15720623  

Lynn Swafford, & Jason E Bond. (2010) Failure to cospeciate: an unsorted tale of millipedes and mites. Biological Journal of the Linnean Society. info:/10.1111/j.1095-8312.2010.01499.x

John N Thompson. (2010) Four Central Points About Coevolution. Evolution: Education and Outreach, 57(1). DOI: 10.1007/s12052-009-0200-x  

  • September 1, 2010
  • 09:05 AM
  • 38 views

New cooperation theory has major Mommy issues

by Jeremy Yoder in Denim and Tweed

The cover article for last week's issue of Nature promised to be the last word in a long-running scientific argument over the evolution of cooperation—but it really just rejiggers the terms of the debate. Instead of solving the problem of how cooperative behavior can evolve, the new paper presents a model of maternal enslavement [$a]. These are not, it turns out, quite the same thing.

Group selection versus kin selection

Let's start with some background. Unselfish, cooperative behavior has long been a puzzle in evolutionary biology, because natural selection should never favor individuals who make significant sacrifices for the benefit of others. Sure, an unselfish individual might expect those she helps to reciprocate later; but a population of the unselfish would be easily overrun by those who don't reciprocate.

There have historically been two answers to the problem of the selfish out-competing the unselfish. The first case is basically an extension of logic we all learned in kindergarten: cooperative groups can do things that uncooperative groups can't. Like, for instance, start a neighborhood garden.



Under this model, neighborhoods of cooperative, garden-making people are nicer places to live, and their inhabitants can collectively out-compete other neighborhoods that can't get it together to start a community garden. In evolutionary terms, this is group selection—even if individuals sacrifice to build the garden, the group as a whole benefits. Unfortunately, this breaks down if the new garden attracts selfish people to move to the neighborhood, buy up all the cheap real estate, and open Urban Outfitters franchises.

There's another possibility, though. What if unselfish behavior isn't always truly unselfish? For instance, if you help your relatives, you're actually helping some of your own genes. You share half your genes with your siblings, a quarter of your genes with half-siblings, an eighth of your genes with first cousins, and so on. This means that Michael Bluth might be on to something.



Evolutionarily speaking, it doesn't matter if Michael spends all his time helping his feckless family, as long those efforts help someone in the family (G.O.B., most likely) reproduce and perpetuate some of the genes that Michael shares with him or her. This idea was advanced by W.D. Hamilton in two 1964 papers, one mathematical [PDF], and one more focused on real-world examples [PDF]; we now know it as kin selection. It doesn't hold up so well for maintaining the kind of complex society humans have today, where we interact with lots of completely unrelated people—but it might have got the ball rolling toward the wheel, war, New York and so forth by selecting for cooperative behaviors within small tribes back at the dawn of history.

The group selection versus kin selection debate has gone back and forth for decades, and the new paper is a shot across the bow of kin selection. The authors, Martin Nowak, Corina Tarnita, and E.O. Wilson, aim to do two things: first, prove that kin selection is wrong; and second, describe an alternative explanation. For the first, they argue that kin selection only applies in narrow circumstances, that those circumstances never show up in nature, and that empirical studies just don't support the model. Johnny Humphreys makes some reasonable objections to these arguments, and so do several folks interviewed by Carl Zimmer, and I'll refer you there rather than try to improve on them.* I'm more interested in the second part: the alternative explanation.

Enslaved by Mom
.flickr-photo { }.flickr-frameright { float: right; text-align: left; margin-left: 15px; margin-bottom: 15px; width:40%;}.flickr-caption { font-size: 0.8em; margin-top: 0px; } No individual fitness for you—you're cogs in the Superorganism. Photo by jby.Nowak et al. propose to explain the evolution of unselfishness as it applies to eusociality—organisms like ants or bees or naked mole rats, in which colonies of (closely related) individuals defer most or all of their opportunities to reproduce, in order to support one or a few individuals that reproduce a lot. As Johnny points out in his critique, it's not clear that eusociality is the same thing as unselfishness at all, even though it's historically cited as an example of unselfishness [$a]. The new model that Nowak et al. develop actually makes the difference between eusociality and unselfishness even clearer. Under their model, it's not that worker ants give up reproductive opportunities to help their mother, the Queen, reproduce—it's that the Queen takes away their reproductive opportunities.

The key insight of the new model is that, in evolving from a non-social insect to a eusocial one, the natural selection that matters affects not the individuals evolving into workers, but the individual who would be Queen. Consider an insect similar to the probable ancestor of ants: females build nests, provision them with food, and lay eggs inside. Nowak et al. propose that a female who evolved the ability to lay "worker" eggs—females that grow up not to found their own nest, but to help in their mother's—would have greater fitness than females without such helpful offspring.

Aside from the probability of evolving "worker" eggs (which is not a small issue, I think), this shift in perspective from the fitness of the worker to the fitness of the Queen makes all sorts of sense to me. I've often wondered why myrmecologists don't treat ant colonies as single organisms, rather than collections of cooperating individuals.

But this approach also seems to sidestep the key question biologists hope to answer with kin selection and group selection models—these models aim to explain how individuals can come together to cooperate, but Nowak et al. have built a model that looks more like enslavement. I can't learn anything about how unselfish behavior can spontaneously evolve in a population by looking at a population that has had unselfishness imposed upon it. To indulge in one last especially geeky pop culture reference, it'd be like trying to learn about market economics by studying The Borg.

Nowak, Tarnita, and Wilson might have come up with a very good model for the evolution of eusociality; but if so, it means that eusociality is a bad model for the evolution of cooperation as we usually conceive it.

------------
* I will, however, note that Nowak et al. do something I've never seen in a scholarly paper before—in dismissing empirical studies of kin selection, they defer substantive discussion to the Supplementary Information. There are, in fact, 43 pages of SI for this 6-page paper, including two major mathematical models and the discussion of empirical kin selection studies. This is a problem, but one that is beyond the scope of this already-long post.

References

... Read more »

Axelrod, R., & Hamilton, W. (1981) The evolution of cooperation. Science, 211(4489), 1390-1396. DOI: 10.1126/science.7466396  

Nowak, M., Tarnita, C., & Wilson, E. (2010) The evolution of eusociality. Nature, 466(7310), 1057-62. DOI: 10.1038/nature09205  

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